Novak continued his good run on Parisian clay as he defeated Albert Ramos-Vinolas 7-6 (5), 6-1, 6-3 to reach the last 8.
The second seed moved into the French Open R4 for the 11th time with a five-set win over Diego Schwartzman.
Kei's withdrawal sends the defending champion into last 4 where he will face Rafael Nadal (ESP, 4).
Novak recorded a 6-4, 7-5 victory over Feliciano Lopez in one hour and 33 minutes on Thursday.
Nole goes on to play Feliciano Lopez (ESP, H2H 8-1) in the last 16 on Thursday.
Djokovic earned his 300th ATP World Tour Masters 1000 victory, beating no.31 seed Juan Martin del Potro 7-5, 4-6, 6-1.